When I installed the side
windows in our
UHaul I left the weatherstrip a couple inches long and trimmed it to the correct length after I had it all in except the last little bit. Took two of us to hold it in place to keep it straight. After the weatherstrip was in place, then we installed the window, then the final task of installing the lock strip using the Lisle tool. Looks like you have small radius corners that make it more difficult. Maybe you can get it to lay flat using a heat gun or hair dryer