When applying decals to areas that are typically waxed, alcohol (the standard rubbing type, don't waste the good stuff) is recomended as a surface preparation for good adhesion. I would think that a good wipe down with the rubbing alcohol in the intended area should be plenty, then just re-wax everything after the paint has set up nicely.
Fiberglass gel-coats are somewhat porous compared to a lot of painted surfaces, so when free of wax / grease / oil, I would think that paint should stick reasonably well, especially to a more aged surface.